PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g05360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 693aa    MW: 71380.5 Da    PI: 8.0677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g05360genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-055678123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  CA02g05360 56 FVCEICNKGFQRDQNLQLHRRGH 78
                89*******************88 PP

2zf-C2H216.72.1e-05132154123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+Lk H++ +
  CA02g05360 132 WKCDKCSKNYAVQSDLKAHLKIC 154
                 58******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-55578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0175678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035519097127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.11E-6128169No hitNo description
SMARTSM0035565132152IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MNDCVGSGEV SVSSSGDQAA HCKEGGKKKR NLPGMPDPNA EVIALSPKTL LATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRESN EVRKRVYVCP EPTCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKN YAVQSDLKAH LKICGTKQYK CDCGTMFSRR DSFITHRAFC  180
DVLAKDREKA QDAVTTPISD EDHKVQAVVS STPSPSTPPT PPPSSEPPAV PSPAAPESLL  240
PPVTPSTAVV SSDCPIQNSE LVESPRTNSD GTITKQFMEE TKAKSSLSGI CRSSSSIGCT  300
NINRLASLTG ICSNSSMSSS SKGSTSSSSI FPSLTGICSS TRSSSSNGST SSISVFPSLT  360
GVCSSNRSSS SNVSTSSISI FPSLTGICSS SRSLSSNVST GSISVFPSLT GISSSSRSLS  420
SNGSTPSSSI FASSTGFCSS SSSLSCNRST SSSSNFSSLN GIGSSSSSSN SNGSASCSSF  480
ASLFASSTAS GSLPSQAPHF TDWFQSVAPA PPPDIEPPSS MEPISLCLAM NYGSSVFGPT  540
GQEGMQYAAA PQPAMSATAL LQKAALMGAT STNSSLLRGL GILSSSSSSS GQHEWSGRQI  600
DTDGATVAAG LGLGLPCDDG SGLKELMLGT PSVFGPKHPT LDLLGLGMAA GGGPTPGLSA  660
LITSMGGNLD VAAAAGPFDS GEFCGEELRR GS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1746070.0AC174607.1 Solanum lycopersicum, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558668.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-112IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLM1B9880.0M1B988_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000400640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106indeterminate(ID)-domain 2